Microorganism response to stressed terrestrial environments: a raman spectroscopic perspective of extremophilic life strategies

Raman spectroscopy is a valuable analytical technique for the identification of biomolecules and minerals in natural samples, which involves little or minimal sample manipulation. In this paper, we evaluate the advantages and disadvantages of this technique applied to the study of extremophiles. Furthermore, we provide a review of the results published, up to the present point in time, of the bio- and geo-strategies adopted by different types of extremophile colonies of microorganisms. We also show the characteristic Raman signatures for the identification of pigments and minerals, which appear in those complex sample

Raman Spectroscopic Analysis of Geological and Biogeological Specimens of Relevance to the ExoMars Mission

H.G.M.E., I.H., and R.I. acknowledge the support of the STFC Research Council in the UK ExoMars programme. J.J. and P.V. acknowledge the support of the Grant Agency of the Czech Republic (210/10/0467) and of the Ministry of Education of the Czech Republic (MSM0021620855).Peer reviewedPublisher PD

Monitoring of Heavy Metal Content in Tawargah Pond in Libya

YesThe current study investigated the distribution of inorganic metals in the biggest reservoir in the neighbourhood of Misurata City, Tawargah Pond. The investigation was carried out during the topical periods of dry and wet season between August 2010 and January 2011. Levels of trace metals lead (Pb), copper (Cu), iron (Fe) and zinc (Zn)) were determined in the water samples taken. An atomic absorption spectrophotometer, Model 180-30 Hitachi, was used to determine heavy metal concentrations. The instrument was calibrated and standardized with different working standards. After making sure that the instrument was properly calibrated and results of the standard measurements were in the confidence limit, the concentration of metals in each sample was measured individually. High levels of lead and iron were found in water which indicates a possible contribution from the industrial activities and air pollution

Raman spectroscopic analysis of the effect of the lichenicolous fungus Xanthoriicola physciae on its lichen host

YesLichenicolous (lichen-dwelling) fungi have been extensively researched taxonomically over many years, and phylogenetically in recent years, but the biology of the relationship between the invading fungus and the lichen host has received limited attention, as has the effects on the chemistry of the host, being difficult to examine in situ. Raman spectroscopy is an established method for the characterization of chemicals in situ, and this technique is applied to a lichenicolous fungus here for the first time. Xanthoriicola physciae occurs in the apothecia of Xanthoria parietina, producing conidia at the hymenium surface. Raman spectroscopy of apothecial sections revealed that parietin and carotenoids were destroyed in infected apothecia. Those compounds protect healthy tissues of the lichen from extreme insolation and their removal may contribute to the deterioration of the apothecia. Scytonemin was also detected, but was most probably derived from associated cyanobacteria. This work shows that Raman spectroscopy has potential for investigating changes in the chemistry of a lichen by an invading lichenicolous fungus.This work was completed while D.L.H. was in receipt of an award from the Ministerio de Economica y Competitividad of Spain (Proyectos CGL 2014-55542-P)

Raman spectroscopy of the Dukhan sabkha: identification of geological and biogeological molecules in an extreme environment

The characterization of minerals and biogeological deposits in a terrestrial Arabian sabkha has a direct relevance for the exploration of Mars since the discovery by the NASA rovers Spirit and Opportunity of evaporate minerals on Mars that could have arisen from aquifers and subsurface water movement. The recognition of carbonates and sulphates in Gusev Crater has afforded an additional impetus to these studies, as relict or extant microbial extremophilic organisms could have colonized these geological matrices, as has been recorded on Earth. Here, we describe the Raman spectroscopic analysis of specimens of evaporitic materials sampled from the Dukhan sabkha, the largest inland sabkha in the Persian Gulf. With daily temperatures reaching in excess of 60°C and extreme salinity, we have identified the characteristic Raman signatures of keybiomolecular compounds in association with evaporitic minerals and geological carbonate and sulphate matrices, which indicate that extremophilic cyanobacterial colonies are existent there. This evidence, the first to be acquired spectroscopically from such a region, establishes a platform for further studies using remote, portable Raman instrumentation that will inform the potential of detection of similar systems on the Martian surface or subsurface in future space missions. A comparison is made between the results from this study and the previous analysis of a gypsum/halite sabkha where the extremophilic molecular signatures were better preserved. © 2010 The Royal Society

Raman spectroscopy: shedding a new light on cultural heritage objects.

Novas tecnologias vêm sendo cada vez mais empregadas no estudo de problemas ligados ao patrimônio histórico cultural e entre elas a espectroscopia Raman ocupa lugar de destaque por se tratar de uma técnica não destrutiva e bastante específica, que proporciona uma quantidade muito grande de informações sobre o objeto em análise. Este texto apresenta uma descrição concisa da técnica, suas principais características e limitações, bem como de suas potencialidades. É ainda apresentada uma breve revisão sobre suas aplicações no campo da arqueologia com especial destaque às investigações envolvendo o patrimônio histórico brasileiro.New technologies are being increasingly used in archaeology and among them Raman spectroscopy is in a leading position, since it is a very specific and non-destructive technique, which provides a wide range of informations about the object under investigation. This text presents a concise description of the technique, its main characteristics and limitations, as well as the potentialities for future applications. A brief review on its applications in archaeology is presented, with special emphasis to investigations involving Brazilian cultural heritage objects

Identification of morphological biosignatures in martian analogue field specimens using in situ planetary instrumentation

We have investigated how morphological biosignatures (i.e., features related to life) might be identified with an array of viable instruments within the framework of robotic planetary surface operations at Mars. This is the first time such an integrated lab-based study has been conducted that incorporates space-qualified instrumentation designed for combined in situ imaging, analysis, and geotechnics (sampling). Specimens were selected on the basis of feature morphology, scale, and analogy to Mars rocks. Two types of morphological criteria were considered: potential signatures of extinct life (fossilized microbial filaments) and of extant life (crypto-chasmoendolithic microorganisms). The materials originated from a variety of topical martian analogue localities on Earth, including impact craters, high-latitude deserts, and hydrothermal deposits. Our in situ payload included a stereo camera, microscope, Mössbauer spectrometer, and sampling device (all space-qualified units from Beagle 2), and an array of commercial instruments, including a multi-spectral imager, an X-ray spectrometer (calibrated to the Beagle 2 instrument), a micro-Raman spectrometer, and a bespoke (custom-designed) X-ray diffractometer. All experiments were conducted within the engineering constraints of in situ operations to generate realistic data and address the practical challenges of measurement

Raman analysis of a shocked planetary surface analogue: Implications for habitability on Mars

The scientific aims of the ExoMars Raman laser spectrometer (RLS) include identifying biological signatures and evidence of mineralogical processes associated with life. The RLS instrument was optimised to identify carbonaceous material, including reduced carbon. Previous studies suggest that reduced carbon on the Martian surface (perhaps originating from past meteoric bombardment) could provide a feedstock for microbial life. Therefore, its origin, form, and thermal history could greatly inform our understanding of Mars' past habitability. Here, we report on the Raman analysis of a Nakhla meteorite analogue (containing carbonaceous material) that was subjected to shock through projectile impact to simulate the effect of meteorite impact. The characterisation was performed using the RLS Simulator, in an equivalent manner to that planned for ExoMars operations. The spectra obtained verify that the flight-representative system can detect reduced carbon in the basaltic sample, discerning between materials that have experienced different levels of thermal processing due to impact shock levels. Furthermore, carbon signatures acquired from the cratered material show an increase in molecular disorder (and we note that this effect will be more evident at higher levels of thermal maturity). This is likely to result from intense shearing forces, suggesting that shock forces within basaltic material may produce more reactive carbon. This result has implications for potential (past) Martian habitability because impacted, reduced carbon may become more biologically accessible. The data presented suggest the RLS instrument will be able to characterise the contribution of impact shock within the landing site region, enhancing our ability to assess habitability

Testing the survival of microfossils in artificial martian sedimentary meteorites during entry into Earth's atmosphere: the STONE 6 experiment

If life ever appeared on Mars, could we find traces of primitive life embedded in sedimentary meteorites? To answer this question, a 3.5 billion-year-old volcanic sediment containing microfossils was embedded in the heat shield of a space capsule in order to test survival of the rock and the microfossils during entry into the Earth's atmosphere (the STONE 6 experiment). The silicified volcanic sediment from the Kitty's Gap Chert (Pilbara, Australia) is considered to be an excellent analogue for Noachian-age volcanic sediments. The microfossils in the chert are also analogues for potential martian life. An additional goal was to investigate the survival of living microorganisms (Chroococcidiopsis) protected by a 2 cm thick layer of rock in order to test whether living endolithic organisms could survive atmospheric entry when protected by a rocky coating. Mineralogical alteration of the sediment due to shock heating was manifested by the formation of a fusion crust, cracks in the chert due to prograde and retrograde changes of ? quartz to ? quartz, increase in the size of the fluid inclusions, and dewatering of the hydromuscovite-replaced volcanic protoliths. The carbonaceous microfossils embedded in the chert matrix survived in the rock away from the fusion crust but there was an increase in the maturity index of the kerogen towards the crust. We conclude that this kind of sediment can survive atmospheric entry and, if it contains microfossils, they could also survive. The living microorganisms were, however, completely carbonised by flame leakage to the back of the sample and therefore non-viable. However, using an analytical model to estimate the temperature reached within the sample thickness, we conclude that, even without flame leakage, the living organisms probably need to be protected by at least 5 cm of rock in order to be shielded from the intense heat of entry